rs50992399 SNP Detail

Summary

• ID
  rs50992399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:5271860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGCCTC ATGTAGACCA
  GCATCATGTG TCCTCAGGGT CTTCCTTCTG GATTTCCCTG TGTCTGTGGA TTTCCCTGTG
  TCTGACTTGG GGCAGAAGTG GCCTTCACTG TGATCATCTT TCTGACCCAG GGCTCCAGAC
  AAGGAGCTGA GAAATGAGGG CTGTCCCCCA CTTTCCAGGT TTCTGAAGCC TCCACTGCCT
  Y
  GCTAGACTTT TATAGCATCT CTGGGAGACA GGGGAAGCAG AGACTAGGTA GACATCTACT
  CTTGTCAACC TGGTGCTGAC ACACAAAGAG ACCAGGAACA TCCATTCATG CCTGGGACAA
  GGGGACTTGA ATAAACAAGA CCCAAAGCTC AGAAAGAAGA CTCAGACAGG GTCTTCTTTG
  GCCATTTTTA AGGGTTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61341855	NES16953119	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50992399					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61341855	NES16953119	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:5271860 () rs orientation: forward

Symbol	Name	Function Class
Klhl29	kelch-like 29	within coordinates
Rr263718	regulatory region 263718	1763 bp proximal
Rr267587	regulatory region 267587	within coordinates