rs50993049 SNP Detail

Summary

• ID
  rs50993049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30253512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTCGTAGC AGAAATGGTG ACTGTGGAGT CAAGGACATG
  GGGTGGGGGG TTATAGGGTA GATATCTAAC TTGGTTACCA CAAAGAGGTG GACCCAGTAT
  Y
  TGAAGGGGAG GGGGGCCAGT TATTATGAGG CTGAGGTTCT GGTGACTTAG AGGGGACAGT
  CTACACAAGT CCTCGGCAGC AGCACTGTAA CCTATGTAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148682360	ENSMUSSNP2527962	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss322135223	CHEV_7_31339106	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50993049					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30253512 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	1436 bp distal
Cpgi18809	CpG island 18809	553 bp distal
Cpgi18810	CpG island 18810	139 bp proximal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	1354 bp downstream
Mir9769	microRNA 9769	1183 bp downstream
Proser3	proline and serine rich 3	1788 bp upstream
Rr400242	regulatory region 400242	1595 bp downstream
Tssr65779	transcription start site region 65779	1523 bp downstream
Tssr65780	transcription start site region 65780	815 bp downstream
Tssr65781	transcription start site region 65781	778 bp downstream
Tssr65782	transcription start site region 65782	685 bp upstream
Tssr65783	transcription start site region 65783	760 bp upstream
Tssr65784	transcription start site region 65784	784 bp upstream
Tssr65785	transcription start site region 65785	836 bp upstream
Tssr65786	transcription start site region 65786	854 bp upstream
Tssr65787	transcription start site region 65787	948 bp upstream
Tssr71787	transcription start site region 71787	1771 bp upstream
Tssr71788	transcription start site region 71788	1712 bp upstream
Tssr71789	transcription start site region 71789	578 bp downstream
Tssr71790	transcription start site region 71790	690 bp downstream