rs50994647 SNP Detail

Summary

• ID
  rs50994647
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100827726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGGTGG GGGGAGAATT
  ACATTTTGTT ACTTAATCCA AAGCAAGTGT CCAGTGCCGT GGACTCCACT AAACCTCTCT
  GCCCCAGGGA GTATTGCTTG AATACAGTTG TAGGCATTGC TACTCATGGA TGGTGACGAG
  AAATGACCAC AGACCTATTC CTTGCCGGTA AGACTTGAGG AGACTTGAGG AAAGGCTTGC
  K
  AAGATAACTT CCAAGAAAGA GCTCTTCAGG TTTGTGAAGA AAGCACTCAT CTTCTTCCTC
  TGATTGCTGC TGGATCTCAA TGAATCGATA GACCAGTTGT AGCCATCACG TGCCCAGGCC
  AAGAAGGGAG CCAGCACTAC AGACATCGGG ACAGAGAGGG AGAAAGAAGA TGGGCCCCTG
  CTGACATGCT CAGCTGTCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61203480	NES16713862	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50994647					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61203480	NES16713862	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100827726 () rs orientation: forward

Symbol	Name	Function Class
Gm15777	predicted gene 15777	within coordinates
Hpse	heparanase	within coordinates
Rr378347	regulatory region 378347	within coordinates
Rr615545	regulatory region 615545	within coordinates
Tssr52114	transcription start site region 52114	209 bp downstream