rs50996432 SNP Detail

Summary

• ID
  rs50996432
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24337785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGA CCCAGGCCAG ACCATCCAGG
  W
  GTATCGTTCA TTCAAAGCTC CGCCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60982644	NES16151005	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		A	T	A		A
ss322120749	CHEV_7_25423379	CHEVERUD	SCREENING_POP	f	SNP									A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50996432					SNP	T	T	T	T	T	T	T	T	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60982644	NES16151005	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24337785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18554	CpG island 18554	975 bp distal
Cpgi18555	CpG island 18555	within coordinates
Cpgi18556	CpG island 18556	1669 bp proximal
Gm26550	predicted gene, 26550	444 bp upstream
Lypd3	Ly6/Plaur domain containing 3	within coordinates
Rr167239	regulatory region 167239	within coordinates
Tssr2135	transcription start site region 2135	1746 bp downstream
Tssr65017	transcription start site region 65017	1840 bp downstream
Tssr65018	transcription start site region 65018	1796 bp downstream
Tssr65019	transcription start site region 65019	1771 bp downstream
Tssr65020	transcription start site region 65020	416 bp upstream
Tssr65021	transcription start site region 65021	424 bp upstream
Tssr65022	transcription start site region 65022	1839 bp upstream