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rs50997140 SNP Detail
Summary
  • ID
    rs50997140
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:127764798 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGTTTCCTAT TTTTAAGCAG
    GTTTGCACCT CTGAAAATTT TGGTGCAGAG TTGTTCTTAT GGGGTCTCCA TTACCTACCT
    GGCTGTTTTC TCTTCTCTGG TGTTCGCTGG GCTGTACAAC CATTATCGGC CACTGGGTGG
    CGCTGAAGCG CCAGGCAAAT TATTTGCTGT GGTCAGGCCA TCATTTTGAC TTTTAGCCAA
    Y
    ACTAAATGTT ACAGGGAAAG GTTACTGACT TCTGCAGTCT TTGAGATACA ATATTTTATT
    ATCTGTCCAT TTCCCTTGAG TTTTTACTTG ACAAAGTCTG AAGGCATTTT CTTTTTGGTT
    TTAGATTAGA GATATTAATT TATTTGTACA TTTTTGTGAC AAGTGGAGTG TTGAAAAAAA
    AAAAAAACCA TACTGTTAAC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss320958803 CHEV_3_127674067 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs50997140 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:127764798 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm35667 predicted gene, 35667 within coordinates
Rr52 regulatory region 52 within coordinates
Rr584913 regulatory region 584913 within coordinates
Rr584914 regulatory region 584914 54 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory