rs50998204 SNP Detail

Summary

• ID
  rs50998204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATAAATT TTTAAACCTA
  TTTATTCATT AGTTTCTGGG GAGAGGGTGA GTTGGGAACT AGCTACATCC CACCCACACA
  GTGAAAGAGA CTGGGGATAA GGGGTGGGGG TGGGGACAAA TAGATGCAGT CGGATGGCTT
  TCATGGAAGG AGTGTGCATG TTCACATCAT TTTTTTGTAA GCACCGAGGA GAGTAGAACA
  R
  CTGTTATTTA GGTTTCAGTG TTTGTAAACT GTATGTACAA CATTTTTGAT GCTGGATTTC
  AATGTAATGT TGTGAGTAAC CCTTGGACAT TTTATGTCTT CCTCGTAAGG CACAGTGCCT
  TGCTTAGCAA TTGTTTTGTC ATGCCTTTTC GTGTCTTGAA GTGGACACAT TTATTTATTC
  ATGTATTTTT ACAAATAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198244	NES16702749	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50998204					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198244	NES16702749	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053578 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Tssr47225	transcription start site region 47225	1908 bp downstream
Tssr47226	transcription start site region 47226	1839 bp downstream
Tssr47227	transcription start site region 47227	1645 bp downstream
Tssr47228	transcription start site region 47228	1582 bp downstream
Tssr47229	transcription start site region 47229	1561 bp downstream
Tssr47230	transcription start site region 47230	1536 bp downstream
Tssr47231	transcription start site region 47231	1506 bp downstream
Tssr47232	transcription start site region 47232	1359 bp downstream
Tssr47233	transcription start site region 47233	1309 bp downstream
Tssr47234	transcription start site region 47234	1274 bp downstream
Tssr47235	transcription start site region 47235	516 bp downstream
Tssr47236	transcription start site region 47236	477 bp downstream
Tssr47237	transcription start site region 47237	457 bp downstream
Tssr47238	transcription start site region 47238	398 bp downstream
Tssr47239	transcription start site region 47239	393 bp downstream
Tssr47240	transcription start site region 47240	374 bp downstream
Tssr47241	transcription start site region 47241	345 bp downstream
Tssr47242	transcription start site region 47242	320 bp downstream
Tssr47243	transcription start site region 47243	302 bp downstream
Tssr47244	transcription start site region 47244	263 bp downstream
Tssr47245	transcription start site region 47245	246 bp downstream
Tssr47246	transcription start site region 47246	192 bp downstream
Tssr47247	transcription start site region 47247	138 bp downstream
Tssr47248	transcription start site region 47248	79 bp downstream
Tssr47249	transcription start site region 47249	18 bp downstream
Tssr47250	transcription start site region 47250	111 bp upstream
Tssr47251	transcription start site region 47251	175 bp upstream
Tssr47252	transcription start site region 47252	227 bp upstream
Tssr51812	transcription start site region 51812	1492 bp upstream
Tssr51813	transcription start site region 51813	1475 bp upstream
Tssr51814	transcription start site region 51814	501 bp upstream
Tssr51815	transcription start site region 51815	455 bp upstream
Tssr51816	transcription start site region 51816	422 bp upstream