rs50998293 SNP Detail

Summary

• ID
  rs50998293
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52093688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTAAGGAG ACACGAGGAC
  CACTACAGAA AAAAAAATGT AAAGTCATAT TAGTACACCA AACACTGATT AGAGGGAGCA
  AAGTTCTGAA ATCTTAGCAA GCGGCTGATT TTTCTCTTTC TTTATGCATT TGTCTTCCTC
  TCTCTTTCTG CGTCTGACTT TGTATTAAGA ACAAAATATT CATAGCATTT GCAAGTTGCA
  M
  TCCTTTGTGG CAACTGAAGT AACTTACCAA GATTACAGAT ATTAAGTTTT GATTGATGGT
  CCTCTACTGT CCAGAAGGGG ATAAAGTAGA TACTACATTT GGGCGGCCTT GTTCTGGCCC
  TAGCCCTGTA ACAAGCAAAC TGAAGCATGT GTTTCCAAGC AGTAACTAGG CTGGTTCCTC
  AAAGGGCCCA GCTTAAACAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60215983	NES15722932	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50998293					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60215983	NES15722932	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52093688 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
D330040H18Rik	RIKEN cDNA D330040H18 gene	292 bp upstream
Tssr141410	transcription start site region 141410	1962 bp upstream
Tssr141411	transcription start site region 141411	1818 bp upstream
Tssr141412	transcription start site region 141412	1795 bp upstream
Tssr141413	transcription start site region 141413	1555 bp upstream
Tssr141414	transcription start site region 141414	1244 bp upstream
Tssr141415	transcription start site region 141415	1115 bp upstream
Tssr141416	transcription start site region 141416	112 bp downstream
Tssr141417	transcription start site region 141417	634 bp downstream
Tssr141418	transcription start site region 141418	843 bp downstream