rs50998415 SNP Detail

Summary

• ID
  rs50998415
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7355460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGGAGCAT ATATTCCCTG GGCTTCTCTG CATCTGTGAA
  GAAGGTTGAT GCAGCTGTCT TTGACCCACT TCGCCAAAAG GTTTATTTCT TTGTGGATAA
  R
  CACTACTGGA GGTAAGGTTC ATTGGCTGGT ACTTTTTTTT GCTAAGATTT GTAAGACAGG
  CACAGAATGG AATTTTTCAG AAGGCAGTCT TTCTATAAAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60680452	NES16229705	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50998415					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60680452	NES16229705	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7355460 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	1914 bp downstream
Tssr83722	transcription start site region 83722	1930 bp downstream
Tssr83723	transcription start site region 83723	1883 bp downstream
Tssr83724	transcription start site region 83724	1564 bp downstream
Tssr83725	transcription start site region 83725	1427 bp downstream
Tssr83726	transcription start site region 83726	1332 bp downstream
Tssr83727	transcription start site region 83727	662 bp downstream
Tssr83728	transcription start site region 83728	637 bp downstream
Tssr83729	transcription start site region 83729	628 bp downstream
Tssr83730	transcription start site region 83730	146 bp downstream
Tssr83731	transcription start site region 83731	102 bp downstream
Tssr83732	transcription start site region 83732	69 bp downstream
Tssr83733	transcription start site region 83733	21 bp downstream
Tssr83734	transcription start site region 83734	364 bp upstream
Tssr83735	transcription start site region 83735	386 bp upstream
Tssr88069	transcription start site region 88069	1955 bp upstream
Tssr88070	transcription start site region 88070	682 bp upstream
Tssr88071	transcription start site region 88071	34 bp upstream