rs50998860 SNP Detail

Summary

• ID
  rs50998860
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32245667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC TTCTGTGTTA TTGTTTGCTT
  C
  TGTTATAAAC ATGAGGTCTC TCTTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss131933865	ENSMUSSNP1105953	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs50998860					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32245667 () rs orientation: forward

Symbol	Name	Function Class
Gm73808	predicted gene, 73808	within coordinates
Gm74521	predicted gene, 74521	821 bp downstream
Hba-a2	hemoglobin alpha, adult chain 2	822 bp upstream
Rr444567	regulatory region 444567	1841 bp distal
Rr444568	regulatory region 444568	1540 bp distal
Rr444569	regulatory region 444569	332 bp proximal
Rr444570	regulatory region 444570	1629 bp proximal
Tssr100842	transcription start site region 100842	824 bp upstream
Tssr100843	transcription start site region 100843	1460 bp upstream
Tssr100844	transcription start site region 100844	1865 bp upstream