rs50999134 SNP Detail

Summary

• ID
  rs50999134
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130912565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGAAAGCT ACAGCAAGAC AAACTGTGGC AGTTTCAGAA
  GGGGGAGCCC CAGATTTTGA GAGGGTAGAG TGGGAAATTT GAAGCCTGTG GACTCTGTAG
  S
  GAAGAACTTT CCTCAAAGGT TTTGGGGGAA CAAAGGAGGG AATGGGATAA GCAGAATAAC
  GTATTCCTGT CCGCCACACA GCTCTGGACT CACCTCCAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147598497	ENSMUSSNP3431918	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50999134					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130912565 () rs orientation: forward

Symbol	Name	Function Class
Siglec1	sialic acid binding Ig-like lectin 1, sialoadhesin	within coordinates
Tssr20240	transcription start site region 20240	1912 bp downstream
Tssr26341	transcription start site region 26341	1755 bp upstream
Tssr26342	transcription start site region 26342	1729 bp upstream
Tssr26343	transcription start site region 26343	1681 bp upstream
Tssr26344	transcription start site region 26344	1630 bp upstream
Tssr26345	transcription start site region 26345	503 bp downstream
Tssr26346	transcription start site region 26346	584 bp downstream
Tssr26347	transcription start site region 26347	617 bp downstream
Tssr26348	transcription start site region 26348	734 bp downstream
Tssr26349	transcription start site region 26349	1978 bp downstream
Tssr26350	transcription start site region 26350	1991 bp downstream