rs50999307 SNP Detail

Summary

• ID
  rs50999307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141151056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA ACACCCCTGG CCAGATCTTT
  Y
  GTACCCTGAT AGCTGAACCC CTCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147736119	ENSMUSSNP151260	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50999307					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141151056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	1905 bp distal
Gm70191	predicted gene, 70191	601 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr603759	regulatory region 603759	1080 bp proximal
Rr603760	regulatory region 603760	1558 bp proximal
Tssr40057	transcription start site region 40057	1974 bp downstream
Tssr40058	transcription start site region 40058	1947 bp downstream
Tssr40059	transcription start site region 40059	1923 bp downstream
Tssr40060	transcription start site region 40060	1863 bp downstream
Tssr40061	transcription start site region 40061	1853 bp downstream
Tssr40062	transcription start site region 40062	1222 bp downstream
Tssr40063	transcription start site region 40063	251 bp upstream
Tssr40064	transcription start site region 40064	311 bp upstream
Tssr40065	transcription start site region 40065	326 bp upstream
Tssr40066	transcription start site region 40066	455 bp upstream
Tssr40067	transcription start site region 40067	503 bp upstream
Tssr40068	transcription start site region 40068	555 bp upstream
Tssr40069	transcription start site region 40069	687 bp upstream
Tssr40070	transcription start site region 40070	772 bp upstream
Tssr40071	transcription start site region 40071	796 bp upstream
Tssr40072	transcription start site region 40072	841 bp upstream
Tssr40073	transcription start site region 40073	864 bp upstream
Tssr40074	transcription start site region 40074	889 bp upstream
Tssr40075	transcription start site region 40075	902 bp upstream
Tssr40076	transcription start site region 40076	929 bp upstream
Tssr40077	transcription start site region 40077	948 bp upstream
Tssr44314	transcription start site region 44314	1106 bp upstream
Tssr44315	transcription start site region 44315	289 bp downstream
Tssr44316	transcription start site region 44316	372 bp downstream
Tssr44317	transcription start site region 44317	430 bp downstream
Tssr44318	transcription start site region 44318	813 bp downstream
Tssr44319	transcription start site region 44319	1823 bp downstream