rs50999952 SNP Detail

Summary

• ID
  rs50999952
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125873370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCGT GTCTGAAGCT CCAGCCCTGG
  R
  GTTTGGGGCT TCCCCTCATC TTTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145871793	ENSMUSSNP2772842	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322450391	CHEV_7_133417712	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50999952					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125873370 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	874 bp distal
Rr655453	regulatory region 655453	1569 bp distal
Sbk1	SH3-binding kinase 1	within coordinates
Tssr69002	transcription start site region 69002	1774 bp downstream
Tssr69003	transcription start site region 69003	1755 bp downstream
Tssr69004	transcription start site region 69004	1743 bp downstream
Tssr69005	transcription start site region 69005	1724 bp downstream
Tssr69006	transcription start site region 69006	1706 bp downstream
Tssr69007	transcription start site region 69007	1674 bp downstream
Tssr69008	transcription start site region 69008	1611 bp downstream
Tssr69009	transcription start site region 69009	1589 bp downstream
Tssr69010	transcription start site region 69010	1403 bp downstream
Tssr69011	transcription start site region 69011	1340 bp downstream