rs51000297 SNP Detail

Summary

• ID
  rs51000297
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72182016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCC CGCGTGTCCT CGCCGGCTGC
  C
  AGGGCCCGGC CGGCCCGGGC CTTCG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss136620084	ENSMUSSNP2758534	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs51000297					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72182016 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22014	CpG island 22014	within coordinates
Gm27253	predicted gene 27253	within coordinates
Rr197186	regulatory region 197186	416 bp distal
Rr206702	regulatory region 206702	within coordinates
Rr368823	regulatory region 368823	621 bp upstream
Tssr85968	transcription start site region 85968	139 bp upstream
Tssr85969	transcription start site region 85969	167 bp upstream
Tssr85970	transcription start site region 85970	207 bp upstream
Tssr85971	transcription start site region 85971	232 bp upstream
Tssr85972	transcription start site region 85972	285 bp upstream
Tssr85973	transcription start site region 85973	753 bp upstream
Zfp280d	zinc finger protein 280D	126 bp upstream