rs51001513 SNP Detail

Summary

• ID
  rs51001513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:11506377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAC AAGGCAGCCT AGCTAGAACA
  Y
  ATCTCACAGG CAGGCAACGG CTTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss131686821	ENSMUSSNP683951	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323561260	CHEV_11_11456380	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51001513					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:11506377 () rs orientation: forward

Symbol	Name	Function Class
Gm11998	predicted gene 11998	1033 bp upstream
Gm29945	predicted gene, 29945	within coordinates
Rr402417	regulatory region 402417	807 bp upstream
Tssr100349	transcription start site region 100349	1011 bp upstream
Tssr100350	transcription start site region 100350	1024 bp upstream
Tssr100351	transcription start site region 100351	1555 bp upstream
Tssr100352	transcription start site region 100352	1630 bp upstream