rs51002292 SNP Detail

Summary

• ID
  rs51002292
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55254276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAAAATTA CACTCCTTGG
  CCTGTTTATG GTGCACACCT TTAAACCCAG CACTTAGGAG GCAGAGGCAG GTGGATCTCT
  GTGAGTTCAA GGTCAGCTTG GAGTGTATAG TGAGTTCCAG AACAACCTGG GCTTCATAGA
  CAAACCCTAT CTCAAAAAAC AAAAACAACC CCACAAACAA CAAAAGTCAC AGCCCTCATC
  R
  CCACTGTCGG GCTCCTCACC CCCTTCACTT GGTTTCTTAA TGACCCCCTC CCTCATCTTT
  AGACAGCACC ATGACGATGT TTTCTCTGCC TCTTGGAGAA CTGTTGGAAA CGCTCAGTTC
  AGTGGTGTTC AGCAACAGCG TTTCAGATCA TTTTTTAGGC GGCATTATCT AGTATTTATC
  CTTCACTGTT CATAGACATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52722740	NES15566705	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A	G	G	G	A		G	G	A	A		G
ss139575873	ENSMUSSNP1180295	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss324641588	CHEV_14_55635656	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51002292					SNP	A	A	A	A	A	G	A	G	G	G	A	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52722740	NES15566705	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55254276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	725 bp distal
Gm63347	predicted gene, 63347	1018 bp upstream
Ngdn	neuroguidin, EIF4E binding protein	within coordinates
Rr369830	regulatory region 369830	1625 bp downstream
Rr369831	regulatory region 369831	1196 bp downstream
Rr492392	regulatory region 492392	1355 bp distal
Rr492393	regulatory region 492393	1652 bp distal
Rr492394	regulatory region 492394	1029 bp distal
Rr492395	regulatory region 492395	537 bp distal
Rr492396	regulatory region 492396	640 bp distal
Tssr125743	transcription start site region 125743	1248 bp downstream