rs51003033 SNP Detail

Summary

• ID
  rs51003033
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98937734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCGATGCC TGCTCCCTTT GGGTACTGAC TGGAGGTGAG
  GTTTAAATGG AAGGCATAAA TAGCGGGGTT CGCCCATTAC TGACTGGTCT GCGCTGTCTC
  Y
  GCTCCCAGCT GCCATCAGGG TGGCCCATAA GTTGTCAGAC TGTCTAACTG AGGTCCTCTG
  GCACCAGGGC ATCGGGCTAG CCTTTTCCTC GTATGGAATA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52581859	NES15643389	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs51003033					SNP	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52581859	NES15643389	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98937734 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7689	CpG island 7689	253 bp proximal
Gm41399	predicted gene, 41399	1383 bp upstream
Gm62755	predicted gene, 62755	712 bp downstream
Rr509290	regulatory region 509290	181 bp proximal
Rr509291	regulatory region 509291	632 bp proximal
Rr509292	regulatory region 509292	1148 bp proximal
Tuba1c	tubulin, alpha 1C	1748 bp downstream