rs51004987 SNP Detail

Summary

• ID
  rs51004987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4298033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAAATAC CCTTGTTTGT
  AAATCCTTAG ACGCTTGAGA ATAAAACCCT TCCCTTTTCT TCCGAGTCTG GTGTCCTAAG
  CCTGGTAGAG TGTACAGAGA TATGGGAAGG GCCTGGGAGG AGGGCTTTTA GTGTGGTTAG
  GGATGACATT CATGGGAAAC TAGCCGGGCC GGGAGCTGGG TGGGAGGTGT TTGGAGTGAC
  Y
  GAAGGCATCA GGCAGCTTTG TGAGGGGCCC CCCTTGTAGA AATTTCAGTA CATCAAGAAA
  GCCCTTATCC ATGGCTGGCC TTGAGCATGT GCTCAGATGT CAGCCCCTCC ATCCTCCGCC
  CCCGCTCCCT GCTTCCCAGG GTGGCAGCCT CACCAAGGCC AGGGCTACCT ACCCACACCT
  AGAGGGCTGG GTACAGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61075436	NES16047354	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51004987					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61075436	NES16047354	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4298033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20049	CpG island 20049	1234 bp proximal
Gm49320	predicted gene, 49320	within coordinates
Gm63796	predicted gene, 63796	within coordinates
Map2k7	mitogen-activated protein kinase kinase 7	136 bp downstream
Tgfbr3l	transforming growth factor, beta receptor III-like	181 bp upstream
Tssr76110	transcription start site region 76110	155 bp upstream
Tssr76111	transcription start site region 76111	190 bp upstream
Tssr76112	transcription start site region 76112	215 bp upstream
Tssr76113	transcription start site region 76113	1424 bp upstream