rs51005459 SNP Detail

Summary

• ID
  rs51005459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45111970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCTCAGC ACTTGAGAAG
  GTAAGACTGA AGACCACATG TTTGGACTAG TATGGGCTAC ATAGTAACTT CCAGACCAGG
  CTTGTATGCA TGACAGGGAG GACAAAGGCT CAGCCTGTAG GGTGCTTGCC TAGAGCGCAC
  AAGGCCTGGG GTCTGTCTAT CCCATTAGCT CCTACACTGA CATGTGGAAG CAGGAGCTCA
  R
  ATGGTCAAGG GCATCTTCAG CTACAGAGTG AGTCTGAAGA CAGCCTGAGA TACAGGAGGC
  CATCTCACGA TGTAAATAAA TAAACGAGAA ACACAACAAG ATGGTCGTCA AAGGATCACC
  CAGTGCATGT GAGAGATTCC AGAAAGGAAG GGAGCAATCA AGTCAGGCCA TGGAAGTCAG
  TGGGTACCAG AGGCACTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149135555	ENSMUSSNP65532	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51005459					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45111970 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	Intron
Gm73429	predicted gene, 73429	1083 bp upstream
Gm73431	predicted gene, 73431	896 bp downstream
Rr380754	regulatory region 380754	1114 bp downstream
Rr646452	regulatory region 646452	1527 bp distal
Rr646453	regulatory region 646453	1094 bp distal
Rr646454	regulatory region 646454	597 bp distal
Rr646455	regulatory region 646455	493 bp proximal
Tssr66542	transcription start site region 66542	1446 bp downstream
Tssr72399	transcription start site region 72399	1600 bp upstream
Tssr72400	transcription start site region 72400	1569 bp upstream