rs51006654 SNP Detail

Summary

• ID
  rs51006654
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138154333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGGGCA CCAGACTGCG
  CCACTTGCTG GCCAGGTTGG GAAGGGACGA TGCGTAAGCT GAAGAAGTTG GAGGTCCAGG
  AAATTCAGGG CACAAGTTCT AGTGGCTCTG AGAGAGAGAG TACACCATCA CCTCCATAGC
  AAGAGAGAGA GTACACCATC ACCTCCATAG CAAATATATG AAACTTGAAG AATCCTTTAA
  Y
  ATAAATGTGC ACCATTGGCT GGTCGTGATG GCGCACGCCT TTAATCCCAG CGCTGGGGAA
  GCACAGTCAG GCAGATCTCT GTGAGGCCAG CCTGGCCTAT GATACAAAAC AAAACAAACA
  AACAAAAAAA TAAATAAATA AAAGTGCACC ATGGGTTTTG GTTTTTGTTT TGTTTTTCTG
  GTTTTTTTTT TTTTAAGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60847387	NES16002785	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51006654					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847387	NES16002785	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138154333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16854	CpG island 16854	205 bp distal
Rr399442	regulatory region 399442	86 bp downstream
Rr623038	regulatory region 623038	378 bp distal
Rr623039	regulatory region 623039	within coordinates
Rr623040	regulatory region 623040	242 bp proximal
Tssr54073	transcription start site region 54073	331 bp upstream
Zfp113	zinc finger protein 113	327 bp upstream