rs51007717 SNP Detail

Summary

• ID
  rs51007717
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101866603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAA ATCAGAGCTA CTTAGAAACA
  Y
  GTGCAGCCCT TAAGGGACCA TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss61446061	NES16829110	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C		C	C	T
ss323155294	CHEV_9_101891734	CHEVERUD	SCREENING_POP	f	SNP							C				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs51007717					SNP	T	T	T	T	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61446061	NES16829110	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101866603 () rs orientation: forward

Symbol	Name	Function Class
Ephb1	Eph receptor B1	within coordinates
Gm31326	predicted gene, 31326	within coordinates
Gm69124	predicted gene, 69124	within coordinates
Rr198442	regulatory region 198442	803 bp distal
Tssr86718	transcription start site region 86718	203 bp downstream