rs51008003 SNP Detail

Summary

• ID
  rs51008003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:44023499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCATTAA AAGTAAATAC
  TAAATTTAAA AATAGAGAGA AAATACTAGT GAAAAATACT GTATCTGTAT TGTCTATACA
  ACTATTTTTC CTTGACATTA TTTCCTAAGT AAGATATTTC ACCACCACGT ATACAGCACT
  TATAGCATAT TCGGTATTAA GAATGTTCTA GAGATGATGA GGGATGGGGA AGGAAGCTGT
  R
  ATGGCAACAC AGCCTGAATT CCCAGTGCCC GGAAGGCTGT GGAATGAGGG TGAAGGTTCC
  GTTGGGTCTG GGCTAAACCT GGGACTCTAA GTGATAATGA AAACAACAAC AATAAAGTCT
  GTGCTAGGAC CTGGGCGCAG TGGAAGCTGC ACTGATCATC TGGCCGTCTG CTTTGAACTT
  CTAGAACTTC CTCCCAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147091229	ENSMUSSNP248987	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51008003					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44023499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1509	CpG island 1509	954 bp proximal
Crybg1	crystallin beta-gamma domain containing 1	within coordinates
D10Mit38	DNA segment, Chr 10, Massachusetts Institute of Technology 38	1418 bp distal
Gm67081	predicted gene, 67081	555 bp upstream
Rr430916	regulatory region 430916	1340 bp proximal
Rr430917	regulatory region 430917	1459 bp proximal
Rr430918	regulatory region 430918	1542 bp proximal
Tssr97502	transcription start site region 97502	1284 bp downstream
Tssr97503	transcription start site region 97503	1313 bp downstream
Tssr97504	transcription start site region 97504	1344 bp downstream
Tssr97505	transcription start site region 97505	1438 bp downstream
Tssr97506	transcription start site region 97506	1459 bp downstream