rs51011504 SNP Detail

Summary

• ID
  rs51011504
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48406660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCG TTCAGACGTC ACGACGTAAA
  S
  GCCCGCCGTG CGCGAGCGCA GACGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61394056	NES16775928	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		C	G		C	C	G		C
ss136454978	ENSMUSSNP6594295	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				C
ss322954388	CHEV_9_48303465	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51011504					SNP	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394056	NES16775928	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48406660 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	619 bp downstream
Cpgi21716	CpG island 21716	within coordinates
Gm5617	predicted gene 5617	82 bp upstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	61 bp upstream
Rr195326	regulatory region 195326	1341 bp proximal
Rr206379	regulatory region 206379	within coordinates
Rr401354	regulatory region 401354	within coordinates
Tssr2862	transcription start site region 2862	512 bp downstream
Tssr84988	transcription start site region 84988	303 bp downstream
Tssr84989	transcription start site region 84989	245 bp downstream
Tssr84990	transcription start site region 84990	140 bp downstream
Tssr84991	transcription start site region 84991	94 bp downstream
Tssr84992	transcription start site region 84992	8 bp upstream
Tssr84993	transcription start site region 84993	46 bp upstream
Tssr84994	transcription start site region 84994	543 bp upstream
Tssr89390	transcription start site region 89390	952 bp upstream
Tssr89391	transcription start site region 89391	933 bp upstream
Tssr89392	transcription start site region 89392	903 bp upstream
Tssr89393	transcription start site region 89393	371 bp upstream
Tssr89394	transcription start site region 89394	87 bp upstream
Tssr89395	transcription start site region 89395	42 bp upstream
Tssr89396	transcription start site region 89396	25 bp upstream