rs51011548 SNP Detail

Summary

• ID
  rs51011548
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30307432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGC ACTCGGGAGG CAGAGGCAGG
  C
  GGATTTCTGA GTTTGAGGCC AGCCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146398639	ENSMUSSNP4946723	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51011548					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30307432 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11436	CpG island 11436	741 bp distal
Crat	carnitine acetyltransferase	1830 bp upstream
Ptpa	protein phosphatase 2 protein activator	within coordinates
Rr554312	regulatory region 554312	1907 bp distal
Rr554313	regulatory region 554313	1268 bp distal
Rr554314	regulatory region 554314	within coordinates
Rr554315	regulatory region 554315	1627 bp proximal
Tssr17115	transcription start site region 17115	1737 bp downstream
Tssr17116	transcription start site region 17116	1343 bp downstream
Tssr17117	transcription start site region 17117	1330 bp downstream
Tssr17118	transcription start site region 17118	1273 bp downstream
Tssr17119	transcription start site region 17119	1199 bp downstream
Tssr23373	transcription start site region 23373	1991 bp upstream
Tssr23374	transcription start site region 23374	1971 bp upstream
Tssr23375	transcription start site region 23375	1915 bp upstream
Tssr23376	transcription start site region 23376	1860 bp upstream
Tssr23377	transcription start site region 23377	1808 bp upstream
Tssr23378	transcription start site region 23378	1796 bp upstream
Tssr23379	transcription start site region 23379	1712 bp upstream
Tssr23380	transcription start site region 23380	1646 bp upstream
Tssr23381	transcription start site region 23381	1375 bp upstream