rs51011548 SNP Detail

Summary

• ID
  rs51011548
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30307432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGC ACTCGGGAGG CAGAGGCAGG
  C
  GGATTTCTGA GTTTGAGGCC AGCCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146398639	ENSMUSSNP4946723	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51011548					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30307432 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11436	CpG island 11436			741 bp distal
Crat	carnitine acetyltransferase			1830 bp upstream
Ptpa	protein phosphatase 2 protein activator			Intron
				Noncoding-Transcript-Variant
Rr554312	regulatory region 554312			1907 bp distal
Rr554313	regulatory region 554313			1268 bp distal
Rr554314	regulatory region 554314			within coordinates
Rr554315	regulatory region 554315			1627 bp proximal
Tssr17115	transcription start site region 17115			1737 bp downstream
Tssr17116	transcription start site region 17116			1343 bp downstream
Tssr17117	transcription start site region 17117			1330 bp downstream
Tssr17118	transcription start site region 17118			1273 bp downstream
Tssr17119	transcription start site region 17119			1199 bp downstream
Tssr23373	transcription start site region 23373			1991 bp upstream
Tssr23374	transcription start site region 23374			1971 bp upstream
Tssr23375	transcription start site region 23375			1915 bp upstream
Tssr23376	transcription start site region 23376			1860 bp upstream
Tssr23377	transcription start site region 23377			1808 bp upstream
Tssr23378	transcription start site region 23378			1796 bp upstream
Tssr23379	transcription start site region 23379			1712 bp upstream
Tssr23380	transcription start site region 23380			1646 bp upstream
Tssr23381	transcription start site region 23381			1375 bp upstream