rs51013937 SNP Detail

Summary

• ID
  rs51013937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126221603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCTATGC GTTCTACTAT
  CAAATGGTAT CCTTAAAAAT AAATAGGGTT GAGCTGGAGA GATGGCTCAG CGGTTAAGAG
  CATTGACTGC TTTTCAGAGG TCCTGAGTTC AACTCCCAGC AACTACATGG TGGCTCACAA
  TCATCTGTAA TGGGATCTGA TGCCCTCTTC TGGTGTGTCT GAAGACAGCT ACCAGGTACT
  Y
  ATATACAGAA AATGAATAAA TAATTCTTTT TAAGAACGAA TAGGCTAAGT GGGAGTGGTG
  ATACGGGTGC CTAGAATTTG AGGCTTAGAG GGCCACTTGA GTTCAGGAGT TTGAGACCAG
  CCTCAAGAAA ATGGACTTGC CACCTGTGTT ACTTAGGAGT ATTTACTCAT AGAACTTGTG
  TGTGAGAAAG AACATTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145875109	ENSMUSSNP429261	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51013937					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126221603 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	within coordinates
Nupr1	nuclear protein transcription regulator 1	815 bp downstream
Rr655536	regulatory region 655536	721 bp distal
Rr655537	regulatory region 655537	170 bp distal
Rr655538	regulatory region 655538	23 bp distal
Tssr69045	transcription start site region 69045	473 bp upstream
Tssr69046	transcription start site region 69046	814 bp upstream
Tssr69047	transcription start site region 69047	1016 bp upstream