rs51014060 SNP Detail

Summary

• ID
  rs51014060
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144103850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCATCTC TGTCCACCTG
  AGACAGGCAG CTCTCGGAGC TACAGAGTGC TCACAGTTCC AAGTTGAAGA AGGGTTTGCC
  CGTCTCGGAA AGGATCCCGG TGGAAATTCA ATTGAGTCCA CTGGCTTCAT CCGTGGACCA
  GCGAGGCTCC CTGTAGCATT TGAAGGTTCG CCCGTTTTGG CAGCTCTGAA GATCAAACCC
  W
  GCACCTGCTA GGCTGACAGT GTAGCACTGA GCTCCATTCC AGTCCTGCTA TTTCAAGTCT
  TGAATCAAAA GCAGGCATTC CCTAATAGCA CACGGATAAT CCTGCAGAAG AAACCGGAAA
  TGTAGATAGA CTCTTCTGTT TCAGCAATAG AGGCTTTTAT AGGTAAAGGG ATATGTGGGT
  TTGAGCCGAA GGGTGTTTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136030756	ENSMUSSNP6256414	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51014060					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144103850 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13898	CpG island 13898	1298 bp distal
Gm65349	predicted gene, 65349	1350 bp upstream
Rr586643	regulatory region 586643	1371 bp distal
Rr586644	regulatory region 586644	1201 bp distal
Rr586645	regulatory region 586645	1221 bp proximal
Rr586646	regulatory region 586646	1837 bp proximal