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rs51014271 SNP Detail
Summary
  • ID
    rs51014271
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:153728022 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TGCATATAAG ATTTTAATCA TGTTAATCCC ATTATTCTTC
    TGGCCTCCTC TCACTTGAGT TAATCTCCCT GTTCCCAGCA AGATTCATCT CTCCTTTCAT
    R
    AGTTTTTGTG TATGTGATCC AATGAGTTAC ATTAGGATTG TTTATAAGCA CGTGTGAATT
    TCTCCACAGA AGCATAGGCA CCTAACAGTA GCTATAATT                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss145750779 ENSMUSSNP2988698 ENSEMBL ENSEMBL_Sanger f SNP G G A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs51014271 SNP G G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:153728022 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Teddm2 transmembrane epididymal family member 2 1081 bp upstream
Tssr14286 transcription start site region 14286 1521 bp upstream
Tssr14287 transcription start site region 14287 1232 bp upstream
Tssr14288 transcription start site region 14288 1215 bp upstream
Tssr14289 transcription start site region 14289 1187 bp upstream
Tssr14290 transcription start site region 14290 1102 bp upstream
Tssr14291 transcription start site region 14291 1078 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory