rs51017542 SNP Detail

Summary

• ID
  rs51017542
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96244455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGCATGT AGGCGGCCTC
  TCAATGGCAG ACCCTACATG TCTAGAGACA CAGCCTTCAA GGCTGAGGAT TTAGTTTGTC
  TTCCTCTCAC ACACATTCTT AATGTCTCTG TGCGGGGTGG GATCTTCTGC ACTGGTTTAG
  GATTACTATA ATGAACTCAA AATTTACTAT GTGAGCACAA GGATAAGTAC TGATTCTATA
  W
  AGAGGTCTTG CTTAGTTCTT CCTAGGCTAA CCTCAACTTT ATCCTTACTC CCACTTTGTA
  CAGGTTCTCT GCTTAAATGC ATATTACCAA GGAAACCTAT ATCCTAACAC AAAGGTTAAA
  ACAGCACTGT TGGAGCTGCC ATGATGGTCC ACTCATGTAA GTGACTGAGG CAAGAGGGCC
  ACCAACAATT AGTTAATCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61442325	NES16828788	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A		A	A	T	T		A
ss323108151	CHEV_9_96262821	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51017542					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61442325	NES16828788	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96244455 () rs orientation: forward

Symbol	Name	Function Class
Atp1b3	ATPase, Na+/K+ transporting, beta 3 polypeptide	within coordinates
Cpgi22162	CpG island 22162	1101 bp proximal
Gm68867	predicted gene, 68867	within coordinates
Tssr86601	transcription start site region 86601	1522 bp upstream
Tssr90956	transcription start site region 90956	1897 bp downstream