rs51019133 SNP Detail

Summary

• ID
  rs51019133
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17668007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CAGAAGCATT TGGTTAAAGG TGCCTTGTTC ATTTATGATA
  TTTCTAAGAG CTATGGATAT TAACTATTTA GAATTGGAAT GTGTTCAGAA TGAGCCTCTA
  R
  GCACTGCCTG ACAAGATGGT CCCCTGAATG AGAAATGTGT AGTAAACCGC ACACAAGTGA
  CCTGGGAGAC TAGAGCAGGG GAAGAGCTAT GAGCAGCCCC G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147880307	ENSMUSSNP2878795	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51019133					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17668007 () rs orientation: forward

Symbol	Name	Function Class
Del(16Dgcr2-Hira)1Rak	deletion, Chr 16, Raju Kucherlapati 1	within coordinates
Del(16Dgcr2-Hira)3Aam	deletion, Chr 16, Alea A Mills 3	within coordinates
Dgcr2	DiGeorge syndrome critical region gene 2	within coordinates
Gm20518	predicted gene 20518	within coordinates
Rr316903	regulatory region 316903	407 bp distal
Rr320389	regulatory region 320389	806 bp distal
Rr322902	regulatory region 322902	1806 bp proximal