rs51019486 SNP Detail

Summary

• ID
  rs51019486
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:69831564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGATGGA AAGGAAATAC
  CCAACCTTGT TTCACATCAG CGAAGTCAAA TGTGGGGCTG GATCTACCAA GCAATTAAGC
  TTTGTAGTGT CGATCCTAAC AAGACTCCCA AATCCTGACT CAATCCACAA GAAATTTGAA
  GTTTCCTAAA CTGAATATAC TTTTTAAACA CACAAAGACC TTAGAACACT CCTCTGAAAA
  W
  ATACAGGAAC AAATGTTTCA TTTCTTTTAT GACTACAGAC CATACATAAC TAGGCTATTA
  AAAATGATTA ATATCATGTC TTTAAGGTCA TGATACATAT ACATGTATAC ATGTGCATAT
  ATATATGATG AGCTACTGCA TCTGTTCTCG TGTTATACCA TTATCAGCTG TTAACCAGGC
  CATAAGAAAC AGAGTCACCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss61285357	NES16895470	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A		A		T
ss323355497	CHEV_10_69458482	CHEVERUD	SCREENING_POP	f	SNP											T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs51019486					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61285357	NES16895470	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:69831564 () rs orientation: forward

Symbol	Name	Function Class
Ank3	ankyrin 3, epithelial	within coordinates
Tssr93980	transcription start site region 93980	1322 bp downstream