rs51021402 SNP Detail

Summary

• ID
  rs51021402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4218925 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAGTC CACAAAGGTA GAAACTGCGG
  R
  TAGGGGACAA GGGGCTAAGG AGACG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146743531	ENSMUSSNP6582872	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss323240829	CHEV_10_6077616	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51021402					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4218925 () rs orientation: reverse

Symbol	Name	Function Class
Akap12	A kinase anchor protein 12	within coordinates
Cpgi1267	CpG island 1267	1783 bp distal
Gm67397	predicted gene, 67397	within coordinates
Rr384064	regulatory region 384064	186 bp upstream
Rr426945	regulatory region 426945	1629 bp distal
Tssr92242	transcription start site region 92242	441 bp downstream