rs51022781 SNP Detail

Summary

• ID
  rs51022781
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53614651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTAGCATC CCTAACCCAA GAACACATTA GATCTGAAAA
  CCAACTCTCA AATGTAGTAG CCACCTGGCA CTGCCCCAGC TCACCGGAAG ATGTTACGGG
  R
  AGGTATCATG GTGTGTGTAT GTGTGTGTGT GTGTGTTCGT TCTCGAGTGC ACGCAGTGAG
  TACATGCACA CTTCTCTGTC CCCAGCCCAC ATCCATCAAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss61805368	NES17736153	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs51022781					SNP	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61805368	NES17736153	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53614651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5621	CpG island 5621	1288 bp proximal
Gm33763	predicted gene, 33763	1454 bp upstream
Rr388456	regulatory region 388456	190 bp upstream
Rr480050	regulatory region 480050	1023 bp proximal
Rr480051	regulatory region 480051	1414 bp proximal
Rr480052	regulatory region 480052	1507 bp proximal