rs51025366 SNP Detail

Summary

• ID
  rs51025366
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105158522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCT CACCAGCCTC CTAGGAGGCA
  Y
  TTATTAAACT AAGTAGTACA CAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147157836	ENSMUSSNP5465487	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321243512	CHEV_4_104973930	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51025366					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105158522 () rs orientation: forward

Symbol	Name	Function Class
D4Mit306	DNA Segment, Chr 4, Massachusetts Institute of Technology 306	1527 bp distal
Rr596588	regulatory region 596588	1699 bp distal
Rr596589	regulatory region 596589	286 bp proximal
Rr596590	regulatory region 596590	479 bp proximal