rs51025510 SNP Detail

Summary

• ID
  rs51025510
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148782690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCCTAGTA ATCTACATTT AATAGGCAAG
  GTATAGGCGG AAATTTAACG TGTCAGTAAA CTCCAAACAA GAACTGAACT AGCCTTACCT
  TGTCAGAAGT CCTCGGTCCA CACAGAACAC CACTTATTAC CTCCCTTCAA TCTGAGGCAA
  R
  TGGTCCAAGA GAAGGAGATG TAAGCCTTCG GAAGAGGCTT CTGGCCAGAC CAGTCACAAC
  ACCACTACTG GGATCCTCCG AAGCCTGCCC TTCTGGCCCG TCATGAATTT CCTACGCAGA
  CAGGTGTCAT ATTGGCATGA ATTTCGTTGC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61098099	NES16608688	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A		G	G	G	G		G
ss321017235	CHEV_3_148740018	CHEVERUD	SCREENING_POP	f	SNP									A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51025510					SNP	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61098099	NES16608688	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148782690 () rs orientation: forward

Symbol	Name	Function Class
Rr587252	regulatory region 587252	827 bp distal
Rr587253	regulatory region 587253	7 bp proximal
Rr587254	regulatory region 587254	1901 bp proximal
Tssr36091	transcription start site region 36091	35 bp downstream
Tssr36092	transcription start site region 36092	60 bp downstream
Tssr36093	transcription start site region 36093	97 bp downstream
Tssr36094	transcription start site region 36094	125 bp downstream
Tssr36095	transcription start site region 36095	182 bp downstream
Tssr36096	transcription start site region 36096	287 bp downstream