rs51026640 SNP Detail

Summary

• ID
  rs51026640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123259847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTTTAAT TTTCCTACTC
  AAGGATACAT GTTTATTACA ATGTGTGACT GCTGCTGAAG GTTCCTTTAG GGCTTTGTCT
  GGAAGAAACA TGGTCTATAT TGACAGAATA TCATGCAATA AATGCAGTCC TGAGACAGAA
  AAATGTGAAC ATGAATTTTT AAATAATTTC ACTTTGAACC TACTGAGCAG GTTCTACTTG
  Y
  GCAGTAGATA CAAGTACAGG TGAAATCCAG TTTATAGAAG AGAACACAGA GAAAATGGGG
  CTCCAGGAAG AGTGGACTAG ATCACAATCT GTTAGGAACT GAAGTTTGAC CGGCCTTTCC
  ATATGGAGAT GTCCTTGCTG AAGGCCATGC CATTCTCCCA AGCGGCAGGT AAGTTTAAAG
  ACTCAAAGAT GCATCTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936909	NES16189347	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51026640					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936909	NES16189347	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123259847 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	108 bp downstream
Tssr58809	transcription start site region 58809	504 bp upstream
Tssr58810	transcription start site region 58810	530 bp upstream
Tssr58811	transcription start site region 58811	566 bp upstream
Tssr63019	transcription start site region 63019	1316 bp upstream
Tssr63020	transcription start site region 63020	384 bp upstream
Tssr63021	transcription start site region 63021	306 bp upstream
Tssr63022	transcription start site region 63022	267 bp upstream
Tssr63023	transcription start site region 63023	212 bp upstream
Tssr63024	transcription start site region 63024	114 bp upstream
Tssr63025	transcription start site region 63025	82 bp upstream
Tssr63026	transcription start site region 63026	61 bp upstream
Tssr63027	transcription start site region 63027	23 bp upstream
Tssr63028	transcription start site region 63028	within coordinates
Tssr63029	transcription start site region 63029	14 bp downstream
Tssr63030	transcription start site region 63030	44 bp downstream
Tssr63031	transcription start site region 63031	101 bp downstream
Tssr63032	transcription start site region 63032	125 bp downstream
Tssr63033	transcription start site region 63033	150 bp downstream
Tssr63034	transcription start site region 63034	169 bp downstream
Tssr63035	transcription start site region 63035	190 bp downstream
Tssr63036	transcription start site region 63036	244 bp downstream
Tssr63037	transcription start site region 63037	274 bp downstream
Tssr63038	transcription start site region 63038	311 bp downstream
Tssr63039	transcription start site region 63039	370 bp downstream
Tssr63040	transcription start site region 63040	428 bp downstream
Tssr63041	transcription start site region 63041	477 bp downstream
Tssr63042	transcription start site region 63042	502 bp downstream
Tssr63043	transcription start site region 63043	512 bp downstream
Tssr63044	transcription start site region 63044	534 bp downstream
Tssr63045	transcription start site region 63045	625 bp downstream
Tssr63046	transcription start site region 63046	644 bp downstream
Tssr63047	transcription start site region 63047	667 bp downstream
Tssr63048	transcription start site region 63048	695 bp downstream
Tssr63049	transcription start site region 63049	710 bp downstream
Tssr63050	transcription start site region 63050	734 bp downstream
Tssr63051	transcription start site region 63051	786 bp downstream