rs51027161 SNP Detail

Summary

• ID
  rs51027161
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127274142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGAAAGG ACCCCCTCCT
  TGAGCCCCTA TTTGTTGTCT GGTTTTTGTT GTCTCCTGGC ATACTTTCTC ATAGCAATAG
  CCATAAAGGA CATGTTTCTG CTTCAGGTAA CCACATTCAG GGCAAATGTT GGGAGCTATT
  AAGACAACTC TTGATCTTTA AATTGGACCT CTCTCCACGA GAAGAAAAGA GGGTCAAAAG
  Y
  GGGCCACCGA CACATGGATT CTGAGAACCA CAGGATGTTC CAGCCCTAAA TCATCTCAGA
  TGTCCTGACC ACACCCTGAT ACCACCAAGT TCCTGCTTCC CCGTGTAACT GCCTAAGAAT
  GTGCAATTCT ATTGCCCTCC TCCCACTGAT AAGTACTTCT CCTTTTGCTT GTATTGCCCC
  ACCCCTCCCG CTGATAAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135864444	ENSMUSSNP3149045	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51027161					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127274142 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	Intron
Gm42525	predicted gene 42525	within coordinates
Gm43355	predicted gene 43355	within coordinates
Gm54939	predicted gene, 54939	627 bp upstream