rs51028541 SNP Detail

Summary

• ID
  rs51028541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70990682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGAGAGCA GGTGTGAGGC CACTGGGTTC CCAGAGCATC
  CTAGTAGGAA GTCTAGGAGC CCCAGCCTAG ACCAGACCAG GTCTATCCAA GACAACCAGC
  R
  AATGCCCTCT CTCCAGCCCT GCGTCCTGGT CCATCATGAC CTGAGTATGT GTTTGAGTAT
  GAGCGTCTTT TGTGACCATC AGTGACTGAG AGTGTCTGCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52651851	NES15472012	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51028541					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52651851	NES15472012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70990682 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	752 bp upstream
Cpgi5821	CpG island 5821	723 bp distal
Gm36529	predicted gene, 36529	within coordinates
Rr482301	regulatory region 482301	1903 bp distal
Rr482302	regulatory region 482302	1853 bp distal
Rr482303	regulatory region 482303	820 bp distal
Rr482304	regulatory region 482304	262 bp distal
Tssr123158	transcription start site region 123158	847 bp upstream
Tssr123159	transcription start site region 123159	809 bp upstream
Tssr123160	transcription start site region 123160	780 bp upstream
Tssr123161	transcription start site region 123161	753 bp upstream