rs51030652 SNP Detail

Summary

• ID
  rs51030652
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72155340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTAAATC TCCTAGGAGC
  GTCCCCAACC ACGCCCTTCC TCAGAAGTTA CCTCAAAAAC TTGGTGGTCT TAACTCTGAG
  TCCCAGGCCC TAGTAGCCTG CTGGAGGGAG AAGTAAGCTC CTAAACCGGA AACTGAGTCC
  TCCTGACACT GGCTCCCTGG ACCAGTACAC AGTGGGCAGA GCTCCAGGAT TGTCCCTTGA
  Y
  GTGGTAATCC TTCCCTGAGT GCACCCAGAG GTCACAGCAG CCCTATTCAC GGGCACTGGG
  ATATTAGTGA ACCATAAAAA TGATTGAAGA GGCCCTGCTG TTGAGTGACA GCAGCTAGTA
  CAAACGTCCC ACCTGTGTCA CACGGCAGAA AAATCCACAG ACAAGGAGCA GGTCAGGGGC
  GGGAGGGATG ATCTTGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60630721	NES16282516	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51030652					SNP	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60630721	NES16282516	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72155340 () rs orientation: forward

Symbol	Name	Function Class
B3gnt3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	907 bp upstream
Cpgi20570	CpG island 20570	860 bp distal
Gm18860	predicted gene, 18860	1509 bp downstream
Rr382258	regulatory region 382258	1349 bp downstream
Rr665157	regulatory region 665157	918 bp distal
Rr665158	regulatory region 665158	417 bp distal
Rr665159	regulatory region 665159	704 bp distal
Rr665160	regulatory region 665160	486 bp distal
Rr665161	regulatory region 665161	583 bp proximal
Rr665162	regulatory region 665162	584 bp proximal
Tssr81749	transcription start site region 81749	942 bp upstream
Tssr81750	transcription start site region 81750	912 bp upstream
Tssr81751	transcription start site region 81751	855 bp upstream
Tssr81752	transcription start site region 81752	62 bp upstream