rs51031239 SNP Detail

Summary

• ID
  rs51031239
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:61212513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAATTTTT ATTATTTACA GTAAGCCTTA AACAGCACTC
  TGACAGCTGG GCAGATATCT ACCTTCTATG TAATTAGAAT TTCCTTTTTT CTTTTCTTTT
  T
  TTTTTTTTAA TTCTCAGGAC CTGCATGGTA GCTTCTCCTA GGTTCTGGTG CCCTCTTCTG
  GCATGCAGTC ATATAAGGCA GCAGATAGAG CACGCACAC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146621696	ENSMUSSNP3894295	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51031239					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:61212513 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11146	CpG island 11146	836 bp proximal
Csf2ra	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	mRNA-UTR
Gm56644	predicted gene, 56644	within coordinates
Rr406075	regulatory region 406075	206 bp upstream
Rr406076	regulatory region 406076	1857 bp upstream
Rr550838	regulatory region 550838	within coordinates
Rr550839	regulatory region 550839	45 bp proximal
Tssr157374	transcription start site region 157374	322 bp upstream
Tssr157375	transcription start site region 157375	396 bp upstream
Tssr157376	transcription start site region 157376	438 bp upstream
Tssr157377	transcription start site region 157377	477 bp upstream
Tssr157378	transcription start site region 157378	598 bp upstream
Tssr157379	transcription start site region 157379	631 bp upstream
Tssr160090	transcription start site region 160090	512 bp downstream
Tssr160091	transcription start site region 160091	534 bp downstream
Tssr160092	transcription start site region 160092	661 bp downstream
Tssr160093	transcription start site region 160093	763 bp downstream
Tssr160094	transcription start site region 160094	826 bp downstream
Tssr160095	transcription start site region 160095	912 bp downstream
Tssr160096	transcription start site region 160096	1333 bp downstream
Tssr160097	transcription start site region 160097	1524 bp downstream