rs51031689 SNP Detail

Summary

• ID
  rs51031689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81017556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGGTGAGT GTCTGGTCCC TGGGGTTTGC AGATAACCTG
  CAAGGCCTGT GTAATATAGC TGCGGGGTGC AGAACAGAAG CAGATTTCTG TCATCACGGC
  Y
  AGCTTGCTTA AGGGTGCCAG GAAAGACAGA GCTACAAACT ACACAGAGAA ACCAAAACAA
  AGGACCCAGG AATCCCTCCT GGGAGGGGTG GCAAGACAGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388436	NES15267112	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51031689					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388436	NES15267112	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81017556 () rs orientation: forward

Symbol	Name	Function Class
4930442H23Rik	RIKEN cDNA 4930442H23 gene	883 bp downstream
Cpgi1951	CpG island 1951	825 bp proximal
Dapk3	death-associated protein kinase 3	1283 bp upstream
Eef2	eukaryotic translation elongation factor 2	within coordinates
Rr435546	regulatory region 435546	1534 bp distal
Rr435547	regulatory region 435547	793 bp proximal
Rr435548	regulatory region 435548	1706 bp proximal
Tssr3283	transcription start site region 3283	705 bp upstream
Tssr94705	transcription start site region 94705	1983 bp downstream
Tssr94706	transcription start site region 94706	1815 bp downstream
Tssr94707	transcription start site region 94707	1760 bp downstream
Tssr94708	transcription start site region 94708	1704 bp downstream
Tssr94709	transcription start site region 94709	1446 bp downstream
Tssr94710	transcription start site region 94710	678 bp upstream
Tssr94711	transcription start site region 94711	1278 bp upstream
Tssr94712	transcription start site region 94712	1334 bp upstream
Tssr94713	transcription start site region 94713	1500 bp upstream
Tssr94714	transcription start site region 94714	1562 bp upstream
Tssr98571	transcription start site region 98571	1943 bp upstream