rs51032589 SNP Detail

Summary

• ID
  rs51032589
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152917413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACAGCCCA GGGGCTTTTC TTAAGATGTA
  AGTagctggg gagaggtggt gcataccttt aatcctagca cttgggagac agaggcaggc
  agatttctga gtttgagtcc agcctagtct acagtgtgag ttccaggaca gccagggcta
  M
  atagtgagac cctgtctcaa aaatcaaaCC AAAACAAAGA CATAAGTAAG ATTATACCAC
  TTGCTTTTTC TTTATTACTT AACAACTTca cacacacaca cacacacaca cacacGCTAC
  CTCCCAGAGA CCATCCAACA TAAACGGTGC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145736641	ENSMUSSNP5393742	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss320070058	CHEV_1_154888792	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51032589					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152917413 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420581	regulatory region 420581			852 bp distal
Rr420582	regulatory region 420582			1289 bp distal
Rr420583	regulatory region 420583			1110 bp distal