rs51033919 SNP Detail

Summary

• ID
  rs51033919
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:91402439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAACAGA CCTAAGGAGT
  ACACTGATGT TAAAAACACT TCTCTCTGCA TTTCACCTGC AAGCTTCAGA AATACTATGT
  GTCCCCCAAC ATATCTATGG CCTGAATCAC TGCTTTGCTT TGTCTATTTC ACTTTTATTA
  CCCAAGGTTC GACTGACTGT TCAGTTAGTT GTTTTCACTG TGACAGGGTC AGAACCAAGG
  R
  CCTTATAGGT GCCAAGCAAG CAGTTTACCA CAGCCTCCAT TTCCTTTCCA TTGTGAATCA
  GGGTCTCACT CTGTTGTCCA GGATGGTGAT GAATCACAGG GACTCGTTAT CCTCCTACTT
  CAGCCTCCTG AAGAGCAAGC ATTACAGACC TGGGTGTTTG GGTTTGGTTT TATCTTAGAC
  ATAAAGCTAT TTCTACCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60293379	NES15791727	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51033919					SNP	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60293379	NES15791727	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:91402439 () rs orientation: forward

Symbol	Name	Function Class
Nrxn1	neurexin I	1940 bp upstream
Rr334029	regulatory region 334029	1839 bp distal
Rr340336	regulatory region 340336	839 bp distal
Tssr149874	transcription start site region 149874	1982 bp upstream
Tssr149875	transcription start site region 149875	1934 bp upstream