rs51034610 SNP Detail

Summary

• ID
  rs51034610
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48530143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG GGAGGTGAAA AATGCCTCCA
  R
  TCCCTGAGCA AAAAAACCCA CCAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133164114	ENSMUSSNP2625597	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss321793656	CHEV_6_48503208	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51034610					SNP	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48530143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	1248 bp proximal
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	795 bp downstream
Lrrc61	leucine rich repeat containing 61	1589 bp upstream
Rr399635	regulatory region 399635	1309 bp upstream
Rr629686	regulatory region 629686	within coordinates
Rr629687	regulatory region 629687	427 bp proximal
Rr629688	regulatory region 629688	1554 bp proximal
Rr629689	regulatory region 629689	1607 bp proximal
Tssr56137	transcription start site region 56137	1567 bp upstream
Tssr56138	transcription start site region 56138	1721 bp upstream
Tssr60734	transcription start site region 60734	1448 bp downstream
Tssr60735	transcription start site region 60735	1465 bp downstream
Tssr60736	transcription start site region 60736	1508 bp downstream