rs51035693 SNP Detail

Summary

• ID
  rs51035693
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:52846093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTTAGCT AAATTCTCTG
  TGATGTTCTC AAATGTGTGT AACAATGGAG CCCTTCTCTA CTGAGCCCAA AGTCAGCAAA
  CTCCAGTGTG TGTGGCCGCT ACTGTGGTCT GCACGAAAGG CTTAGTTTTG AATCCTGATA
  TGCTTATATA AGTTTCTCCT TCGTTATATA ATATTTCTTT GTTCAGTGGA ATTTTGGTAC
  R
  TTTAAATTTT TGAATATGTC ACTGTGGTAC CAGGTTCAGC CTCCCTTCTC AGGGTGTGCA
  GGTGCCACCA GCAAACTGGG GGTCCACAGT CTGCATAAGT CAGATACTGT TCCAGGAGGG
  GGTGAAGTGG AGTGGGACGG GAAGAAAAGA GAGTATGAAG CAGCTCTCTG AGACAATCCT
  GGCTTGTTCA TATTTCTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52422076	NES15408956	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	G	A	A	A		G	A	A	G		G
ss137742244	ENSMUSSNP6879488	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss324040932	CHEV_12_53900297	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51035693					SNP	G	G	A	A	A	A	A	G	A	A	A	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52422076	NES15408956	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52846093 () rs orientation: forward

Symbol	Name	Function Class
Akap6	A kinase anchor protein 6	Intron
Gm51971	predicted gene, 51971	within coordinates
Gm59837	predicted gene, 59837	180 bp downstream
Rr466054	regulatory region 466054	414 bp proximal