rs51035719 SNP Detail

Summary

• ID
  rs51035719
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172040315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAT ACGTTTGTGT GCAGTGTTGT
  R
  CTCAGCCTCT CACCAGAGCA CTGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007484	PARCsnp_1.17820	PARC_SEQ	INBRED	f	SNP		G	A
ss120010396	PARCsnp_1.07465	PARC_SEQ	INBRED	f	SNP		G	A
ss146184071	ENSMUSSNP633332	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320123268	CHEV_1_174142879	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs51035719					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172040315 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr15175	transcription start site region 15175	726 bp upstream
Tssr15176	transcription start site region 15176	316 bp downstream
Tssr15177	transcription start site region 15177	370 bp downstream
Tssr15178	transcription start site region 15178	394 bp downstream
Tssr15179	transcription start site region 15179	416 bp downstream
Tssr15180	transcription start site region 15180	621 bp downstream
Tssr15181	transcription start site region 15181	1197 bp downstream