rs51037681 SNP Detail

Summary

• ID
  rs51037681
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81333255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTAACAT TTTTGGTTTG
  CCCTATTGCA ACTTCAATGG ATTTGACTAG TCCCTGTGTC TTGGGGTAAG TTAAGATGTG
  AATTAAAATT ATATGTCACT CACACCTCTA GAAATACAAT AAATAAGAAA TAAAAGACCA
  GACACTGCCA CCCACCCACT GGCAGCCACA GGTGGGAATT TGATATGCAA ACTGGCATGA
  R
  CTGACTTTGA GTAAGATTCG CGACTGGTGA GTGCTGGCTT TCGAAGCCTG TGGAGAACTT
  GGGGATGGTG CCTTCTCTGA AGACCATTTG CCTTAGGTAA GAAAACAGAT TCTAAGACTC
  AAACTTGTGG TCCTTTCCCC CGGGTGAGTG ATAACTGCCA ACTGTATACC GAGGCCACAG
  ACAATCAGAA CTGAAAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292409	NES16908888	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51037681					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292409	NES16908888	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81333255 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1993	CpG island 1993	764 bp distal
Cpgi1994	CpG island 1994	1099 bp proximal
Ncln	nicalin	1029 bp upstream
Rr402085	regulatory region 402085	836 bp downstream
Rr435684	regulatory region 435684	1106 bp distal
Rr435686	regulatory region 435686	539 bp distal
Rr435687	regulatory region 435687	965 bp distal
Rr435688	regulatory region 435688	1980 bp proximal
S1pr4	sphingosine-1-phosphate receptor 4	326 bp downstream
Tssr98629	transcription start site region 98629	1097 bp upstream
Tssr98630	transcription start site region 98630	1034 bp upstream