rs51040440 SNP Detail

Summary

• ID
  rs51040440
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138556529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CCCAAAGAGC TCCTATGTGC TATCCTTCTT GCAGACTAGG
  GACCAGATGA TCATGGACAG GAGCCAAAAG GGCAACATTT CCCATGCAAA CAATCACACA
  T
  ACACACACAC ACACACACAC ACACACACAC ACACACCATA GACCCATGGG ATGAACCAAT
  GAGTTTGTGG ACATTAGTTA TAGGAGTATA AGAGAAGAGT C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss144549858	ENSMUSSNP3896636	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs51040440					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138556529 () rs orientation: forward

Symbol	Name	Function Class
D5Dcr15	DNA Segment, Chr 5, Derry C. Roopenian 15	1080 bp distal
D5Mit31	DNA segment, Chr 5, Massachusetts Institute of Technology 31	1074 bp distal