rs51041245 SNP Detail

Summary

• ID
  rs51041245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53627347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGTTTCT GGTGCCGATC
  CCACACGCTC CCGCCTGAGA ATGTTGGAAA TCTGCGGAGG GCATGGAACA TTTATAAAGC
  TCCCACTATG AGCTCAAACT AGTGTATCTT TGTAACTATA ATGGAAAACA ATAGCAGCAT
  CTTTACTAAT AGAAATAGTT TAGGCATGGT CCTTAGTTGT CTTATCTTTG GAGAGTGTTC
  Y
  AAGACATTAG CTGTAACTCA TTCCTTAAGA AAAGGGACAA AGATGAGAAA GGCTGAGAGG
  TGGTCAAGGG ATATTCAACT AATCTCTACC CTTTCTCCCT TTTTTTTTCC TTTAAAACAG
  ACTCTTGCTC TCCAGCTCTG GCTAGCTTAG AAGTCGCTCC CTATCTTACC CAAGATGGTC
  CTGAACTTGC TACCCCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61805330	NES17735855	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51041245					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61805330	NES17735855	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53627347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5623	CpG island 5623	155 bp distal
Gm33763	predicted gene, 33763	within coordinates
Msx2	msh homeobox 2	531 bp upstream
Rr281405	regulatory region 281405	146 bp distal
Rr281406	regulatory region 281406	1853 bp proximal
Tssr122586	transcription start site region 122586	586 bp upstream
Tssr122587	transcription start site region 122587	524 bp upstream
Tssr122588	transcription start site region 122588	501 bp upstream
Tssr122589	transcription start site region 122589	461 bp upstream