rs51041825 SNP Detail

Summary

• ID
  rs51041825
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22714982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGATGA CTGGAACATT
  GAATTCTGAA GGTTGAGGGC CAGGAGATGC TGGGTTTCCA TCCCTGCCGG ACTAAAGTTA
  GCCTTTTGGC TTCCTGTTTC CTCTCTGAAA ACTTAACCTC TGCCCCATGC GATGGACAAC
  GATCTCTTGC CAATACTTTG AGAAGACTCA GATCTTTCAT CTGCAGCCCA TCGTCAGAAC
  W
  CAATCCTTCC AATTGCCCAG GGCCACACGT AGTCCGTGTG GATTTGTGTT CTCTCAAACT
  GTGCCAGACC ATAGCTTCTC CTCTCCATCC CTCCCACCCT CCCTCTTACC TTCCTTCCTC
  CTCTCCTTTG CTCCCTCCCT CCCTCTCCCT CCTCCTCTCT GTCACTTCCT CCCTCTATCC
  CACCTCTCCT TCCCCCCTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63681298	NES17064342	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51041825					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63681298	NES17064342	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22714982 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	1846 bp upstream
Tssr4819	transcription start site region 4819	891 bp downstream
Tssr4820	transcription start site region 4820	275 bp downstream
Tssr137563	transcription start site region 137563	1991 bp downstream
Tssr137564	transcription start site region 137564	1961 bp downstream
Tssr137565	transcription start site region 137565	1824 bp downstream
Tssr137566	transcription start site region 137566	1815 bp downstream
Tssr137567	transcription start site region 137567	1447 bp downstream
Tssr137568	transcription start site region 137568	1416 bp downstream
Tssr137569	transcription start site region 137569	1395 bp downstream
Tssr137570	transcription start site region 137570	1378 bp downstream
Tssr137571	transcription start site region 137571	1040 bp downstream
Tssr137572	transcription start site region 137572	941 bp downstream
Tssr137573	transcription start site region 137573	931 bp downstream
Tssr137574	transcription start site region 137574	912 bp downstream
Tssr137575	transcription start site region 137575	902 bp downstream
Tssr137576	transcription start site region 137576	217 bp downstream
Tssr137577	transcription start site region 137577	190 bp upstream
Tssr137578	transcription start site region 137578	261 bp upstream
Tssr137579	transcription start site region 137579	1883 bp upstream
Tssr137580	transcription start site region 137580	1933 bp upstream
Tssr140504	transcription start site region 140504	1840 bp upstream
Tssr140505	transcription start site region 140505	1791 bp upstream
Tssr140506	transcription start site region 140506	1371 bp upstream
Tssr140507	transcription start site region 140507	1008 bp upstream
Tssr140508	transcription start site region 140508	966 bp upstream
Tssr140509	transcription start site region 140509	948 bp upstream
Tssr140510	transcription start site region 140510	900 bp upstream
Tssr140511	transcription start site region 140511	886 bp upstream
Tssr140512	transcription start site region 140512	325 bp downstream
Tssr140513	transcription start site region 140513	336 bp downstream
Tssr140514	transcription start site region 140514	369 bp downstream
Tssr140515	transcription start site region 140515	1944 bp downstream
Tssr140516	transcription start site region 140516	1963 bp downstream