rs51042814 SNP Detail

Summary

• ID
  rs51042814
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21693997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCTGCA TACTTTCCTG
  CAGGGAGCTA CTTGCCCTAC TACATTCTCT CCTGCATATT TTCCCTTAGC AACTCTAGCA
  ACACCTCCTG GGGAACAAGA GGGGCGCTAG TCGCTCCTCT TCCGAAGCAG CTATTAATTA
  GTGTCCAAAT GTTCTCCAGA TGGCGGGGCT AGAGCCATTA GCAGACTTGG TGCCTAAAAC
  R
  GGCCAACCTC TTCAAAAGTC AATTTGCCCA TAAACATCTT ACCCAATCAT GTAATGTCAA
  GACTTAGAAA CCCCCACTTA CTGTTTTATT TTCCTTTAAG AACCCCTTCC TTCAGACATT
  GTGGTAGCTC ACCTACCCTC CTGCATCACA AAAGGTTTGC TGCCTGAGCA TCGAAGTGAG
  TCCTGGAGAG AGTGCCCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60547453	NES16569637	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51042814					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60547453	NES16569637	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21693997 () rs orientation: forward

Symbol	Name	Function Class
Gm52290	predicted gene, 52290	82 bp upstream
Gm56906	predicted gene, 56906	1012 bp upstream
Rr392397	regulatory region 392397	within coordinates
Rr522958	regulatory region 522958	519 bp distal
Rr522959	regulatory region 522959	within coordinates
Rr522960	regulatory region 522960	31 bp distal
Rr522961	regulatory region 522961	922 bp proximal
Rr522962	regulatory region 522962	1023 bp proximal
Tssr142877	transcription start site region 142877	108 bp upstream
Tssr142878	transcription start site region 142878	514 bp upstream
Tssr142879	transcription start site region 142879	1172 bp upstream