rs51043228 SNP Detail

Summary

• ID
  rs51043228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110445976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTTTTCT GTAGACACAT
  TTCAAAATTT TAAATTTAAA TAACCCTTCT TTTTGAATAG GTTTGCAACT TTTTTGTTTT
  TGTTTTTAGC TAAGGTTTTG ATAGACAATA AGCTGTGCTT CATGAAGCAA GAATTTTCTG
  TTTGAGGAAA CATTCAGAAG ATAGGAATTA TCTTAAGTCT CAGCACTCAG GAGGCACAGG
  Y
  AGGTGGATCT GTGAGATCAA GGCCACTCTG GTCTACAGAG TGAATTCCAG GACAGCCAGG
  ATTATACAGG GAAATGCTGG GGGAAAAAAA AGAGGCGAAT TTAAGATAGC AGAACACAAA
  GCTTTCCGAG TTTCCATATC AACTATATTA CTTCAGTTTC AGCATAAGTG AAGCATATAT
  GAATATGTTT TAATTCGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321257618	CHEV_4_110261384	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51043228					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110445976 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	within coordinates
Rr377006	regulatory region 377006	696 bp downstream
Tssr38375	transcription start site region 38375	635 bp upstream